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KEGG at http //genome.ad.jp/kegg/ is the reference knowledge base that integrates current knowledge on molecular interaction networks such as pathways and complexes (PATHWAY database), information about genes and proteins generated by genome projects (GENES/SSDB/KO databases) and information about biochemical compounds and reactions (COMPOUND/GLYCAN/REACTION
· Search against genome sequence Search against coding sequences Download KegArray KEGG Expression Database Last updated January 18, 2006 This site is maintained by GenomeNet for the Bacillus subtilis research community in Japan.
· The KEGG Annotation Guide is a collection of HTML tables, called BRITE tables, showing summary views of the current annotation of the KEGG GENES database, such as how K numbers are defined and assigned for distinguishing related genes and for comparing different subunit structures. Comparing subunit structures or gene sets.
The Sugarcane Genome Hub is an integrated web-based database providing centralized access to the sugarcane reference genome sequences and genomic resources. Data currently available is the monoploid reference genome sequence obtained from R570 cultivar. This web portal is built using open-source Tripal database infrastructure.
KEGG is an encyclopedia of genes and genomes. Assigning functional meanings to genes and genomes both at the molecular and higher levels is the primary objective of the KEGG database project.
KEGG pathway maps, BRITE hierarchies and KEGG modules have been developed as generic molecular networks with KEGG Orthology nodes of functional orthologs so that KEGG pathway mapping and other procedures can be applied to any cellular organism.
The genome sequence of the corn snake (Pantherophis guttatus), a valuable resource for EvoDevo studies in squamates. Journal Int J Dev Biol 58 881-8 (2014) DOI 10.1387/ijdb.150060at
First, KEGG computerizes data and knowledge on protein interaction networks (PATHWAY datab Novartis Found Symp . 91-101 discussion 101-3, 119-28, 244-52.
· KEGG Virus is a resource for integrating viruses and cellular organisms from an evolutionary perspective. Virus data are part of the PATHWAY, BRITE, KO, GENES, GENOME, NETWORK, DISEASE and DRUG databases as summarized below. Database. Virus data. Remark. PATHWAY. Disease pathway maps for viral infections. Genetic information processing in viruses.
· New approach for understanding genome variations in KEGG. Minoru Kanehisa, Minoru Kanehisa. Institute for Chemical Research, Kyoto University, Uji, Kyoto , Japan. To whom correspondence should be addressed. Tel 81 774 38 4521 Fax 81 774 38 3269 Email [email protected] Search for other works by this author on
· CYORF is a vehicle by which the community of cyanobacteriologists collectively annotates available genomes from cyanobacteria. In this way, the genomes are curated by experts from the field as a whole. We welcome anyone interested to join in the effort. If you know something that's not in this database, we need your insight!
· KEGG (Kyoto Encyclopedia of Genes and Genomes) is an effort to link genomic information with higher order functional information by computerizing current knowledge on cellular processes and by standardizing gene annotations. Generally speaking, the biological function of the living cell is a result of many interacting molecules it cannot be
· Kyoto Encyclopedia of Genes and Genomes (KEGG) is a knowledge base for systematic analysis of gene functions in terms of the networks of genes and molecules. The major component of KEGG is the PATHWAY database that consists of graphical diagrams of biochemical pathways including most of the known
2007 rows · KEGG Organisms Complete Genomes Eukaryotes 587 Bacteria 6359 Archaea 350 [
· KEGG Orthology (KO) groups KEGG GENOME KEGG organisms (complete genomes) KEGG GENES Gene catalogs of KEGG organisms, viruses, plasmids and addendum category Chemical Information (KEGG LIGAND) KEGG COMPOUND Metabolites and other small molecules KEGG GLYCAN Glycans KEGG REACTION Biochemical reactions KEGG RPAIR Reactant pairs
· CYORF is a vehicle by which the community of cyanobacteriologists collectively annotates available genomes from cyanobacteria. In this way, the genomes are curated by experts from the field as a whole. We welcome anyone interested to join in the effort. If you know something that's not in this database, we need your insight!
The KEGG resource for deciphering the genome Nucleic Acids Res. 2004 Jan 132(Database issue) D277-80. doi 10.1093/nar/gkh063. Authors Minoru Kanehisa 1 , Susumu Goto, Shuichi Kawashima, Yasushi Okuno, Masahiro Hattori. Affiliation 1 Bioinformatics Center, Institute for
T number T07324 Org code mmuc Aliases Full name Mycolicibacterium mucogenicum Definition Mycolicibacterium mucogenicum DSM 44124 Annotation no
KEGG Kyoto Encyclopedia of Genes and Genomes KEGG is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies.
· The KEGG resource for deciphering the genome. Minoru Kanehisa, Minoru Kanehisa. Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611‐0011, Japan. *To whom correspondence should be addressed. Tel 81 774 38 3270 Fax 81 774 38 3269 Email [email protected]‐u.ac.jp. Search for other works by this
Query KEGG D05358 (Paraffin)2,185 document(s) hit in 31,850,051 MEDLINE articles (0.00 seconds) Paraffin sections of surgical and autopsy material from 24 cases of primary CNS lymphoma were examined for the presence of cytoplasmic immunoglobulin by an immunoperoxidase technique. Definite staining for cytoplasmic immunoglobulin was observed in 13 cases, and in eight of these the pattern of
· The KEGG Annotation Guide is a collection of HTML tables, called BRITE tables, showing summary views of the current annotation of the KEGG GENES database, such as how K numbers are defined and assigned for distinguishing related genes and for comparing different subunit structures. Comparing subunit structures or gene sets.
KEGG GENOME is a collection of KEGG organisms, which are the organisms with complete genome sequences and each of which is identified by the three- or four-letter organism code, and selected viruses with relevance to diseases. KEGG GENOME is supplemented by MGENOME, a collection of metagenome sequences from environmental samples (ecosystems).
kegg Kyoto Encyclopedia of Genes and Genomes kegg Release 99.0 /07-20, Jul 21 Kanehisa Laboratories pathway 796,192 entries brite 276,647 entries module 519 entries orthology 24,529 entries genome 7,663 entries genes 35,649,303 entries compound 18,820 entries glycan 11,039 entries reaction 11,562 entries rclass 3,173 entries enzyme 7,852 entries network 1,508 entries variant 455 entries
The mission of UniProt is to provide the scientific community with a comprehensive, high-quality and freely accessible resource of protein sequence and functional information.
· The Database for Annotation, Visualization and Integrated Discovery (DAVID ) v6.8 comprises a full Knowledgebase update to the sixth version of our original web-accessible programs. DAVID now provides a comprehensive set of functional annotation tools for investigators to understand biological meaning behind large list of genes.
Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. (351) KEGG PATHWAY (168) KEGG MODULE (183) Genome (1) ASSEMBLY (1) Gene (22568) KEGG GENES (22042) KEGG MGENES (526) Literature (1) PubMed (1) Taxonomy (1) TAX (1
· KEGG (Kyoto Encyclopedia of Genes and Genomes) is an effort to link genomic information with higher order functional information by computerizing current knowledge on cellular processes and by standardizing gene annotations.
KAAS (KEGG Automatic Annotation Server) provides functional annotation of genes by BLAST or GHOST comparisons against the manually curated KEGG GENES database. The result contains KO (KEGG Orthology) assignments and automatically generated KEGG pathways.KAAS Help Complete or Draft Genome
· The KEGG database project was initiated in 1995, the last year of the first 5-year phase of the Japanese Human Genome Programme . After 10 years of development in parallel with the growing number of completely sequenced genomes and increased activities in post-genomic research, the KEGG project has entered a new phase in accordance with the
· KEGG Pathogen Resource KEGG Pathogen is an interface to pathogen genomes and infectious diseases in KEGG for understanding molecular mechanisms of pathogenicity and antimicrobial resistance (AMR) from genomic information. It summarizes various datasets stored in the GENOME, GENES, PATHWAY, DISEASE and DRUG databases.
The KEGG pathway maps, BRITE hierarchies and KEGG modules are developed as networks of KO nodes, representing high-level functions of the cell and the organism. Currently, more than 4000 complete genomes are annotated with KOs in the KEGG GENES database, which can be used as a reference data set for KO assignment and subsequent reconstruction
· KEGG PATHWAY is a collection of manually drawn pathway maps representing our knowledge of the molecular interaction, reaction and relation networks for 1. Metabolism
